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ESPript
Formating of multiple sequence alignments to a color postscript file. Can include graphical features by using PDB entry.
Meta-MEME v2.0.1
Software toolkit for building and using motif-based hidden Markov models of DNA and proteins - from the Univ. of California-San Diego.
The ISREC Group Servers
Detection and assessment of similarity between distantly related sequences by means of a variety of remotely-executable software - from the Swiss Inst. for Experimental Cancer Research.
GeneMatcher
Access to Smith-Waterman-based FDF sequence comparison program, with excellent explanation of when to use it vs. BLAST - from the Univ. of Lausanne, FR.
Interactive Blast Query
Utility for online manipulation of Blast results. Results organized in a table format.
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