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Ymol
A free molecular visualization and animation program for the X window system. Creates images and movies, using either the built in renderer or povray. Still alpha.
ProteinScope
ProteinScope is a free program to view and create animations of Protein Data Bank PDB files.
Swiss-PdbViewer
A free program for viewing and analyzing several proteins at the same time. Some energy minimzation and homology modeling features are also included.
WebLab Viewer
A Windows9X/NT program to visualize and analyze small molecules and proteins. Also available as an ActiveX Control.
ChemCraft
Windows-based program for visualization of molecular structures, vibrational modes, molecular orbitals, energy gradient and other properties from log files produced by the GAMESS and Gaussian packages.
Review of Molecular Modelling Programs
Reviews, screenshots, and table of features comparing over a dozen freely available molecular modelling and viewing programs.
Molymod Molecular Models
Plastic molecular models for use in chemistry, biochemistry, molecular biology (DNA double helix), semiconductors and crystal lattice structures.
Dino
A free 3D visualization program for structural biology data with emphasis on analyzing surface or electron density properties. Output can be written as PNG, PostScript or POV-Ray. Runs on IRIX, Linux, OSF1 and SunOS.
MOLMOL
A free program for displaying, analyzing, and manipulating the three-dimensional structure of biological macromolecules, with emphasis on structures determined by NMR. Runs on UNIX and Windows NT/95. The site offers an online tutorial.
Protein Explorer
A web-based viewer for the 3D structures of proteins, DNA and RNA. Requires Netscape and the Chime plugin, which is only available for Windows9x.
More Visualization Sites
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